PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 878325
Common NameARALYDRAFT_677769
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 84aa    MW: 9848.2 Da    PI: 7.5237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
878325genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-093672644
                     HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +eE++l+ +  k+ G + W++Ia +++ gRt++++  +w
           878325 36 QEEEDLICRMYKLVGER-WDLIAGRIP-GRTAEEIERFW 72
                     7**************99.*********.********999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-63078IPR001005SANT/Myb domain
CDDcd001675.56E-63672No hitNo description
SuperFamilySSF466892.85E-73675IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-113673IPR009057Homeodomain-like
PfamPF002494.9E-83673IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:1900033Biological Processnegative regulation of trichome patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MDTQRKSKHL KTNPTTVASS SEEVSSLEWE EIAMAQEEED LICRMYKLVG ERWDLIAGRI  60
PGRTAEEIER FWVMKNHRRS RLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195181e-122AY519518.1 Arabidopsis thaliana MYB transcription factor (At1g01380) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892067.12e-55predicted protein
SwissprotQ9LNI51e-44ETC1_ARATH; MYB-like transcription factor ETC1
TrEMBLD7KQ812e-55D7KQ81_ARALL; Predicted protein
STRINGAl_scaffold_0001_925e-55(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32328194
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.13e-38MYB_related family protein